PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.146980.1
Common NameCsa_1G529120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 436aa    MW: 48967.4 Da    PI: 6.2555
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.146980.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-17134180148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l ++vkq+G + W+ Ia+++  gR +kqc++rw+++l
   Cucsa.146980.1 134 KGQWTEEEDRKLTRLVKQHGVRKWAQIAEKLE-GRAGKQCRERWHNHL 180
                      799*****************************.*************97 PP

2Myb_DNA-binding49.31.1e-15186228145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +W++eE+ +lv+ +++ G++ W+ Ia+ ++ gRt++ +k++w+
   Cucsa.146980.1 186 KESWSEEEERILVETHARVGNR-WAEIAKSIP-GRTENAIKNHWN 228
                      578*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.976129184IPR017930Myb domain
SuperFamilySSF466899.71E-30131227IPR009057Homeodomain-like
SMARTSM007171.3E-16133182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-28135188IPR009057Homeodomain-like
PfamPF139211.5E-18137194No hitNo description
CDDcd001672.03E-15137180No hitNo description
PROSITE profilePS5129419.775185235IPR017930Myb domain
SMARTSM007171.2E-14185233IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-20189233IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MHSNAPPPSA VPPLAAIDRF LYSHNVNGNN CFEKGLIGGL SPEICGGGSG GSGGEWIEVE  60
KRRRVEEKLE LGIEEDEEEE EEEEVTYGWG RKNNNNSEMG FKEMMIRSSN INEVKICSSK  120
FKKFKKRSSA NLIKGQWTEE EDRKLTRLVK QHGVRKWAQI AEKLEGRAGK QCRERWHNHL  180
RPDIKKESWS EEEERILVET HARVGNRWAE IAKSIPGRTE NAIKNHWNAT KRRQNSRRKN  240
KRPNSQNGKP HSSILQDYIK SKYNPAAVTT VPTSTFSDDP SSHFNHFFSE SSDSTSNLSS  300
AIISSPTYDD ELLFMQNFFS NSSDLLSLPS ADDGASMWNQ STVEFGSVDS ERKAERPKTG  360
DDGINVATSS HLCSDMYLSY LLNGTMNNSC GGGGEIQNMA ELQVMAAAGE GLWENSQQVK  420
KEMDLMEMLS FHCYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1msf_C2e-441322342104C-Myb DNA-Binding Domain
1mse_C2e-441322342104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16064KRRRV
2230241KRRQNSRRKNKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819260.0LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457563.10.0PREDICTED: protein ODORANT1
TrEMBLA0A0A0LVH80.0A0A0A0LVH8_CUCSA; Uncharacterized protein
STRINGPOPTR_0009s04870.14e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-64myb domain protein 119
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]